![]() Model formula for the reduced model (that does not contain the terms of interest)ĭata.frame of regressors, containing variables specified in formula.full and formula.redįunction for summarizing univariate test statistics default is sum GGlobalAncova.hierarchical ( data, H, formula.full, formula.red =~ 1, model.dat, sumstat = sum, alpha = 0.05, K, perm = 10000, returnPermstats = FALSE, permstats )ĭata.frame of variables (columns=variables) to be tested hierarchically (multi-) categorical variables should be factors, ordinal variables should be ordered factorsĭendrogram object specifying the hierarchy of the variables labels(H) has to coincide with colnames(data) Plot.subjects-methods: Methods for Function Plot.subjects.Plot.subjects: Subjects Plot for GlobalAncova.quential: Visualization of sequential decomposition.Plot.genes-methods: Methods for Function Plot.genes.Plot.genes: Genes Plot for Global Ancova.Plot.features: Features Plot for generalized Global Ancova.Plot.all: Combined visualization of sequential decomposition and.phenodata: Covariate information for the van t'Veer data.pare: Pairwise comparisons of factor levels within GlobalAncova.GlobalAncova-methods: Methods for Function GlobalAncova.comp: GlobalAncova with sequential and type III sum of squares.GlobalAncova.closed-methods: Methods for Function GlobalAncova.closed.GlobalAncova.closed: Closed testing procedure for testing several groups of genes. ![]() GlobalAncova: Global test for differential gene expression.gGlobalAncova.hierarchical: Hierarchical testing procedure using generalized GlobalAncova.gGlobalAncova: Generalized GlobalAncova group test.genesettesting: Gene set testing of gene set databases using GlobalAncova. ![]()
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